Published JCAMP-DX Protocols

 
 
 
 
dxir01.pdf (1.877.228 Bytes) 
JCAMP-DX: A Standard Form for the Exchange of Infrared Spectra in Computer Readable Form
ROBERT S. McDONALD and PAUL A. WILKS, JR.
Appl. Spectrosc. 42(1), pp151-162, 1988
JCAMP-DX is a standard file form for exchange of infrared spectra and related chemical and physical information between spectrometer data systems of different manufacture, main-frame time-sharing systems, general purpose lab computers, and personal computers. It is compatible with all media: telephone, magnetic and optical disk, magnetic tape, and even the printed page (via optical reader). All data are stored as labeled fields of variable length using printable ASCII characters. A JCAMP-DX spectrum is a text file which can be viewed, corrected, and annotated with a text editor. The present focus is on infrared spectra, but JCAMP-DX can easily accommodate Raman, UV, NMR, mass, and other types of spectra, x-ray powder patterns, chromatograms, thermograms, and other plots which require the capability of representing contours as well as peak position and intensity. JCAMP-DX also provides for combining adequate information about the sample and method of observation with its spectrum. 

dxcs01.pdf  (989.942 Bytes) 
JCAMP-CS: A Standard Exchange Format for Chemical Structure Information in Computer-Readable Form
J. GASTEIGER, B.M P. HENDRIKS, P. HOEVER, C. JOCHUM and H. SOMBERG
Appl. Spectrosc. 5(1), pp4-11,1991  
The JCAMP-DX format provides a standard for the exchange of data on IR spectra. Extensions of this format to other spectral data are being developed. Spectral data should always be accompanied by information on the chemical structure of the investigated compounds. The JCAMP-CS format provides definitions for exchanging information on the composition and the stereochemistry, as well as on the 2D and 3D atomic coordinates, of chemical structures. Where possible, the standard was designed to adhere to the conventions of JCAMP-DX. In addition, care was taken to make as simple as possible the conversion to other formats in use for representing chemical structures. 

dxnmr01.pdf (847.247 Bytes) 
JCAMP-DX for NMR
ANTONY N. DAVIES and PETER LAMPEN
Appl. Spectrosc. 47(8), pp1093-1099, 1993  
Following the development and publication of the JCAMP-DX protocol 4.24 and its successful implementation in the field of infrared spectroscopy, data exchange without loss of information, between systems of different origin and internal format, has become a reality. The benefits of this system-independent data transfer standard have been recognized by workers in other areas who have expressed a wish for an equivalent, compatible standard in their own fields. This publication details a protocol for the exchange of Nuclear Magnetic Resonance (NMR) spectra1 data without any loss of information and in a format that is compatible with all storage media and computer systems. The protocol detailed below is designed for spectra1 data transfer, and its use for NMR imaging data transfer has not as yet been investigated. 

dxms01.pdf (1.062.527 Bytes) 
JCAMP-DX for Mass Spectrometry
PETER LAMPEN, HEINRICH HILLIG, ANTONY N. DAVIES, and MICHAEL LINSCHEID
Appl. Spectrosc. 48(12), pp1545-1552, 1994  
JCAMP-DX has, for several years, been the standard form for the exchange of infrared spectral data. More recently JCAMP-DX protocols have been published for chemical structure data and for nuclear magnetic resonance spectroscopy. This publication presents a new JCAMP-DX data exchange protocol for mass spectrometry, covering the transport of single spectra, spectral series, and raw data files. The protocol can be implemented on any computer system and storage media. It is completely manufacturer independent. As with previous publications in this series, the aim is to provide reliable data transfer without loss of information regardless of the hardware or software involved. A comparison to the work on a binary protocol currently being carried out by the Analytical Instrument Association is also presented. 

dx5-01-correctedv2.pdf (54.333 Bytes) 
An Extension to the JCAMP-DX Standard File Format, JCAMP-DX V.5.01
(IUPAC Recommendations 1999)

PETER LAMPEN, JÖRG LAMBERT, ROBERT J. LANCASHIRE, ROBERT S. McDONALD, PETER S. McINTYRE, DOUGLAS N. RUTLEDGE, THORSTEN FRÖHLICH and ANTONY N. DAVIES
Pure Appl. Chem., 71(8), pp1549-1556, 1999.
Version 5.00 of the JCAMP-DX specifications were published for NMR and Mass Spectrometry file formats in Appl. Spectrosc. 47, 1093-1099 (1993) and Appl. Spectrosc, 48, 1545-1552 (1994). Since publication of these protocols developments in spectroscopy have led to a large number of requests for additions for applications not originally covered. Following careful consideration, it has become apparent that a few minor modifications will significantly increase the range of possible applications. In addition, new data labels have been introduced to ensure that files are year 2000 compliant and allow for conformity with good laboratory practices (GLP). These modifications are detailed in this publication as well as examples of the official NTUPLE JCAMP-DX definition as applied to NMR data. Minor corrections to typing errors have been made to this PDF version.

ims-dx PAC 73(11) pp1765-1782 2001.pdf (179,273 bytes)
JCAMP-DX - A Standard Format for the Exchange of Ion Mobility Spectrometry Data
(IUPAC Recommendations 2001)

JÖRG INGO BAUMBACH, ANTONY N.DAVIES, PETER LAMPEN, and
HARTWIG SCHMIDT
Pure Appl. Chem., 73(11), pp1765–1782, 2001.
The relatively young field of ion mobility spectrometry has now advanced to the stage where the need to reliably exchange the spectroscopic data obtained worldwide by this technique has become extremely urgent. To assist in the validation of the various new spectrometer designs and to assist in inter-comparisons between different laboratories reference data collections are being established for which an internationally recognized electronic data exchange format is essential.
To make the data exchange between users and system administration possible, it is important to define a file format epecially made for the requirements of ion-mobility spectrometry.The format should be computer readable and flexible enough for extensive comments to be included.In this document,we define a data exchange format,agreed on by a working group of the International Society for Ion Mobility Spectrometry at Hilton Head Island, USA (1998)and Buxton,UK (1999).

NMR Pulse Sequences PAC 79(11) pp1748-1764 2001.pdf (225,778 bytes)
GUIDELINES FOR THE REPRESENTATION OF PULSE SEQUENCES FOR SOLUTION-STATE NUCLEAR MAGNETIC RESONANCE SPECTROMETRY
(IUPAC Recommendations 2001)
ANTONY N. DAVIES, JÖRG LAMBERT, ROBERT J.LANCASHIRE, and PETER LAMPEN with WOODY CONOVER, MICHAEL FREY, MICHAEL GRZONKA, EVAN WILLIAMS, and DOUGLAS MEINHART
Pure Appl. Chem., 73(11) pp1749–1764, 2001.
In drawing up the specifications for a standard for multidimensional nuclear magnetic resonance spectroscopy (NMR) it became clear that the spectroscopic data content needed to be qualified by experimental condition information especially pertaining to the pulse sequences used to obtain the free induced decays or spectra.Failure to include this information not only severely inhibits the ability of subsequent data handling packages to work with the experimental data, but also makes interpretation of the final results virtually impossible. This paper has been produced in collaboration with the NMR spectrometer manufacturers in an attempt to get agreement on a definitive list of the most frequently used pulse sequence programs.The list includes entries where common agreement has been reached as to the acronym to name the experiment and the key instrument independent parameters needed to report concisely. It is not intended to restrict in any way the freedom of manufacturers or users to develop new and novel experimental pulse sequences,but should aid reporting of experimental data where the more common sequences are in use.


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